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1

Busemann's intersection inequality in hyperbolic and spherical spaces

Dann, Susanna, Kim, Jaegil, Yaskin, Vladyslav

Journal:

Advances in Mathematics

Year:

2018

Language:

english

File:

PDF, 575 KB

english, 2018

2

The geometry of p-convex intersection bodies

Jaegil Kim, Vladyslav Yaskin, Artem Zvavitch

Journal:

Advances in Mathematics

Year:

2011

Language:

english

File:

PDF, 173 KB

english, 2011

3

A simulation study on novel field stop IGBTs using superjunction

Kwang-Hoon Oh, Jaegil Lee, Kyu-Hyun Lee, Young Chul Kim, Chongman Yun

Journal:

IEEE Transactions on Electron Devices

Year:

2006

Language:

english

File:

PDF, 679 KB

english, 2006

4

KDM4A Lysine Demethylase Induces Site-Specific Copy Gain and Rereplication of Regions Amplified in Tumors

Black, Joshua C., Manning, Amity L., Van Rechem, Capucine, Kim, Jaegil, Ladd, Brendon, Cho, Juok, Pineda, Cristiana M., Murphy, Nancy, Daniels, Danette L., Montagna, Cristina, Lewis, Peter W., Glass,

Journal:

Year:

2013

Language:

english

File:

PDF, 3.74 MB

english, 2013

5

Minimal volume product near Hanner polytopes

Journal:

Journal of Functional Analysis

Year:

2014

Language:

english

File:

PDF, 566 KB

english, 2014

6

Exploring the Solid–Liquid Phase Change of an Adapted Dzugutov Model Using Generalized Replica Exchange Method

Lu, Qing, Kim, Jaegil, Straub, John E.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 2.35 MB

english, 2012

7

Comprehensive Characterization of Cancer Driver Genes and Mutations

Bailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Ng, Patrick Kwok-

Journal:

Year:

2018

Language:

english

File:

PDF, 12.69 MB

english, 2018

8

Distribution functions of sections and projections of convex bodies

Kim, Jaegil, Yaskin, Vladyslav, Zvavitch, Artem

Journal:

Journal of the London Mathematical Society

Year:

2017

Language:

english

File:

PDF, 236 KB

english, 2017

9

Molecular subtypes of diffuse large B cell lymphoma are associated with distinct pathogenic mechanisms and outcomes

Chapuy, Bjoern, Stewart, Chip, Dunford, Andrew J., Kim, Jaegil, Kamburov, Atanas, Redd, Robert A., Lawrence, Mike S., Roemer, Margaretha G. M., Li, Amy J., Ziepert, Marita, Staiger, Annette M., Wala,

Journal:

Nature Medicine

Year:

2018

Language:

english

File:

PDF, 3.83 MB

english, 2018

10

Comprehensive Characterization of Cancer Driver Genes and Mutations

Bailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Kwok-Shing Ng, Pa

Journal:

Year:

2018

Language:

english

File:

PDF, 418 KB

english, 2018

11

Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer

Robertson, A. Gordon, Kim, Jaegil, Al-Ahmadie, Hikmat, Bellmunt, Joaquim, Guo, Guangwu, Cherniack, Andrew D., Hinoue, Toshinori, Laird, Peter W., Hoadley, Katherine A., Akbani, Rehan, Castro, Mauro A.

Journal:

Year:

2018

Language:

english

File:

PDF, 102 KB

english, 2018

12

Mutational processes shape the landscape of TP53 mutations in human cancer

Giacomelli, Andrew O., Yang, Xiaoping, Lintner, Robert E., McFarland, James M., Duby, Marc, Kim, Jaegil, Howard, Thomas P., Takeda, David Y., Ly, Seav Huong, Kim, Eejung, Gannon, Hugh S., Hurhula, Bri

Journal:

Nature Genetics

Year:

2018

Language:

english

File:

PDF, 1.90 MB

english, 2018

13

RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues

Yizhak, Keren, Aguet, François, Kim, Jaegil, Hess, Julian M., Kübler, Kirsten, Grimsby, Jonna, Frazer, Ruslana, Zhang, Hailei, Haradhvala, Nicholas J., Rosebrock, Daniel, Livitz, Dimitri, Li, Xiao, Ar

Journal:

Year:

2019

Language:

english

File:

PDF, 1.48 MB

english, 2019

14

The repertoire of mutational signatures in human cancer

Alexandrov, Ludmil B., Kim, Jaegil, Haradhvala, Nicholas J., Huang, Mi Ni, Tian Ng, Alvin Wei, Wu, Yang, Boot, Arnoud, Covington, Kyle R., Gordenin, Dmitry A., Bergstrom, Erik N., Islam, S. M. Ashiqul

Journal:

Year:

2020

File:

PDF, 6.68 MB

2020

15

Subependymal giant cell astrocytomas are characterized by mTORC1 hyperactivation, a very low somatic mutation rate, and a unique gene expression profile

Giannikou, Krinio, Zhu, Zachary, Kim, Jaegil, Winden, Kellen D., Tyburczy, Magdalena E., Marron, David, Parker, Joel S., Hebert, Zachary, Bongaarts, Anika, Taing, Len, Long, Henry W., Pisano, William

Journal:

Modern Pathology

Year:

2020

File:

PDF, 4.56 MB

2020

16

Strong peak points and strongly norm attaining points with applications to denseness and polynomial numerical indices

Jaegil Kim, Han Ju Lee

Journal:

Journal of Functional Analysis

Year:

2009

Language:

english

File:

PDF, 197 KB

english, 2009

17

Statistical temperature molecular dynamics: Application to coarse-grained β-barrel-forming protein models

Kim, Jaegil, Straub, John E., Keyes, Thomas

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 554 KB

english, 2007

18

LOCAL MINIMALITY OF THE VOLUME-PRODUCT AT THE SIMPLEX

Kim, Jaegil, Reisner, Shlomo

Journal:

Year:

2011

Language:

english

File:

PDF, 150 KB

english, 2011

19

Statistical-Temperature Monte Carlo and Molecular Dynamics Algorithms

Kim, Jaegil, Straub, John E., Keyes, Thomas

Journal:

Physical Review Letters

Year:

2006

Language:

english

File:

PDF, 313 KB

english, 2006

20

The genetic landscape of high-risk neuroblastoma

Pugh, Trevor J, Morozova, Olena, Attiyeh, Edward F, Asgharzadeh, Shahab, Wei, Jun S, Auclair, Daniel, Carter, Scott L, Cibulskis, Kristian, Hanna, Megan, Kiezun, Adam, Kim, Jaegil, Lawrence, Michael S

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 781 KB

english, 2013

21

AIP Conference Proceedings [American Institute of Physics 4TH INTERNATIONAL SYMPOSIUM ON SLOW DYNAMICS IN COMPLEX SYSTEMS: Keep Going Tohoku - Sendai, Japan (2–7 December 2012)] - Effect of size polydispersity on liquid-glass crossover, liquid-crystal transition, and gas-liquid transition of Lennard-Jones fluids

Terada, Yayoi, Keyes, Thomas, Kim, Jaegil, Tokuyama, Michio

Year:

2013

Language:

english

File:

PDF, 2.66 MB

english, 2013

22

Influence of Go-Like Interactions on Global Shapes of Energy Landscapes in β-Barrel Forming Model Proteins: Inherent Structure Analysis and Statistical Temperature Molecular Dynamics Simulation

Kim, Jaegil, Keyes, Thomas

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 664 KB

english, 2008

23

Inherent Structure Analysis of Protein Folding

Kim, Jaegil, Keyes, Thomas

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 481 KB

english, 2007

24

Generalized Replica Exchange Method

Kim, Jaegil, Keyes, Thomas, Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 951 KB

english, 2010

25

Replica Exchange Statistical Temperature Molecular Dynamics Algorithm

Kim, Jaegil, Straub, John E., Keyes, Tom

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

26

[IEEE 2014 6th International Workshop on Science Gateways (IWSG) - Dublin, Ireland (2014.6.3-2014.6.5)] 2014 6th International Workshop on Science Gateways - MapReduce-Based RESTMD: Enabling Large-Scale Sampling Tasks with Distributed HPC Systems

Kondikoppa, Praveenkumar, Platania, Richard, Park, Seung-Jong, Keyes, Tom, Kim, Jaegil, Kim, Nayong, Kim, Joohyun, Bai, Shuju

Year:

2014

Language:

english

File:

PDF, 1013 KB

english, 2014

27

[IEEE RAWCON 99. 1999 IEEE Radio and Wireless Conference - Denver, CO, USA (1-4 Aug. 1999)] RAWCON 99. 1999 IEEE Radio and Wireless Conference (Cat. No.99EX292) - A dynamic channel assignment scheme with two thresholds for load balancing in cellular networks

Jaegil Kim,, Taegyu Lee,, Chong-Sun Hwang,

Year:

1999

Language:

english

File:

PDF, 272 KB

english, 1999

28

Limit of Metastability for Liquid and Vapor Phases of Water

Cho, Woo Jong, Kim, Jaegil, Lee, Joonho, Keyes, Thomas, Straub, John E., Kim, Kwang S.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

29

Stability of the reverse Blaschke-Santaló inequality for unconditional convex bodies

Kim, Jaegil, Zvavitch, Artem

Journal:

Proceedings of the American Mathematical Society

Year:

2014

Language:

english

File:

PDF, 229 KB

english, 2014

30

Investigating the solid-liquid phase transition of water nanofilms using the generalized replica exchange method

Lu, Qing, Kim, Jaegil, Farrell, James D., Wales, David J., Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 992 KB

english, 2014

31

Relationship between protein folding thermodynamics and the energy landscape

Kim, Jaegil, Keyes, Thomas, Straub, John E.

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 167 KB

english, 2009

32

Structure optimization and folding mechanisms of off-lattice protein models using statistical temperature molecular dynamics simulation: Statistical temperature annealing

Kim, Jaegil, Straub, John E., Keyes, Thomas

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 833 KB

english, 2007

33

Entropic Description of Gas Hydrate Ice-Liquid Equilibrium via Enhanced Sampling of Coexisting Phases

Małolepsza, Edyta, Kim, Jaegil, Keyes, Tom

Journal:

Physical Review Letters

Year:

2015

Language:

english

File:

PDF, 3.21 MB

english, 2015

34

Replica exchange statistical temperature Monte Carlo

Kim, Jaegil, Keyes, Thomas, Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 830 KB

english, 2009

35

Optimal replica exchange method combined with Tsallis weight sampling

Kim, Jaegil, Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2009

Language:

english

File:

PDF, 352 KB

english, 2009

36

Publisher’s Note: “Generalized simulated tempering for exploring strong phase transitions” [J. Chem. Phys. 133, 154101 (2010)]

Kim, Jaegil, Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 31 KB

english, 2010

37

Communication: Iteration-free, weighted histogram analysis method in terms of intensive variables

Kim, Jaegil, Keyes, Thomas, Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 485 KB

english, 2011

38

Order parameter free enhanced sampling of the vapor-liquid transition using the generalized replica exchange method

Lu, Qing, Kim, Jaegil, Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 1.25 MB

english, 2013

39

An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers

Chan, Kin, Roberts, Steven A, Klimczak, Leszek J, Sterling, Joan F, Saini, Natalie, Malc, Ewa P, Kim, Jaegil, Kwiatkowski, David J, Fargo, David C, Mieczkowski, Piotr A, Getz, Gad, Gordenin, Dmitry A

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 2.28 MB

english, 2015

40

Generalized simulated tempering for exploring strong phase transitions

Kim, Jaegil, Straub, John E.

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 932 KB

english, 2010

41

Hypoxia drives transient site-specific copy gain and drug-resistant gene expression

Black, Joshua C., Atabakhsh, Elnaz, Kim, Jaegil, Biette, Kelly M., Van Rechem, Capucine, Ladd, Brendon, Burrowes, Paul d., Donado, Carlos, Mattoo, Hamid, Kleinstiver, Benjamin P., Song, Bing, Andriani

Journal:

Genes & Development

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

42

Barbarin as a New Tyrosinase Inhibitor from Barbarea orthocerus

Seo, Boram, Yun, Jieun, Lee, Sungkyu, Kim, Miran, Hwang, Kyungwha, Kim, Jaegil, Min, Kyung Rak, Kim, Youngsoo, Moon, Dongcheul

Journal:

Year:

1999

Language:

english

File:

PDF, 186 KB

english, 1999

43

Regulation of Transient Site-specific Copy Gain by microRNA

Black, Joshua C., Zhang, Hailei, Kim, Jaegil, Getz, Gad, Whetstine, Johnathan R.

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 1.47 MB

english, 2016

44

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair

Haradhvala, Nicholas J., Polak, Paz, Stojanov, Petar, Covington, Kyle R., Shinbrot, Eve, Hess, Julian M., Rheinbay, Esther, Kim, Jaegil, Maruvka, Yosef E., Braunstein, Lior Z., Kamburov, Atanas, Hanaw

Journal:

Year:

2016

Language:

english

File:

PDF, 2.21 MB

english, 2016

45

[IEEE Gateway to 21st Century Communications Village. VTC 1999-Fall. IEEE VTS 50th Vehicular Technology Conference (Cat. No.99CH36324) - Amsterdam, Netherlands (1999.09.19-1999.09.22)] Gateway to 21st Century Communications Village. VTC 1999-Fall. IEEE VTS 50th Vehicular Technology Conference (Cat. No.99CH36324) - Distributed fault-tolerant channel assignment in mobile networks with mobile base stations

Jaegil Kim,, Chong-Sun Hwang,

Year:

1999

Language:

english

File:

PDF, 431 KB

english, 1999

46

Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors

Kim, Jaegil, Mouw, Kent W, Polak, Paz, Braunstein, Lior Z, Kamburov, Atanas, Tiao, Grace, Kwiatkowski, David J, Rosenberg, Jonathan E, Van Allen, Eliezer M, D'Andrea, Alan D, Getz, Gad

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 2.03 MB

english, 2016

47

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

Campbell, Joshua D, Alexandrov, Anton, Kim, Jaegil, Wala, Jeremiah, Berger, Alice H, Pedamallu, Chandra Sekhar, Shukla, Sachet A, Guo, Guangwu, Brooks, Angela N, Murray, Bradley A, Imielinski, Marcin,

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 2.17 MB

english, 2016

48

The Cancer Genome Atlas Project on Muscle-invasive Bladder Cancer

Lerner, Seth P., Weinstein, John, Kwiatkowski, David, Kim, Jaegil, Robertson, Gordon, Hoadley, Katherine A., Akbani, Rehan, Creighton, Chad

Journal:

European Urology Focus

Year:

2015

Language:

english

File:

PDF, 382 KB

english, 2015

49

Association of tumour microRNA profiling with outcomes in patients with advanced urothelial carcinoma receiving first-line platinum-based chemotherapy

Bellmunt, Joaquim, Zhou, Chensheng Willa, Mullane, Stephanie A, Werner, Lillian, Taplin, Mary-Ellen, Fay, André P, Choueiri, Toni K, Orsola, Anna, Takeda, David Y, Hahn, William C, Kim, Jaegil, Sonpav

Journal:

British Journal of Cancer

Year:

2016

Language:

english

File:

PDF, 358 KB

english, 2016

50

On the Local Convexity of Intersection Bodies of Revolution

Alfonseca, M. Angeles, Kim, Jaegil

Year:

2015

Language:

english

File:

PDF, 406 KB

english, 2015